Detailed information of SNP:
|
SNP ID:
sf0623293375(Gbrowse)
Chromosome: chr06 Position: 23293375 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 72.09% | 27.91% |
| All Indica | 799 | 58.20% | 41.80% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623293375 | C->T | INTERGENIC | None |