Detailed information of SNP:
|
SNP ID:
sf0623299021(Gbrowse)
Chromosome: chr06 Position: 23299021 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.49% | 32.51% |
| All Indica | 798 | 45.99% | 54.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 16.80% | 83.20% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623299021 | C->T | LOC_Os06g39250(LOC_Os06g39250.1) | Non-Synonymous SNP |