Detailed information of SNP:
|
SNP ID:
sf0623299557(Gbrowse)
Chromosome: chr06 Position: 23299557 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 72.00% | 28.00% |
| All Indica | 798 | 58.27% | 41.73% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623299557 | G->T | INTERGENIC | None |