Detailed information of SNP:
|
SNP ID:
sf0623314071(Gbrowse)
Chromosome: chr06 Position: 23314071 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 73.08% | 26.92% |
| All Indica | 789 | 55.26% | 44.74% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 370 | 30.81% | 69.19% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623314071 | G->A | LOC_Os06g39280(LOC_Os06g39280.1) | Non-Synonymous SNP |