Detailed information of SNP:
|
SNP ID:
sf0623322379(Gbrowse)
Chromosome: chr06 Position: 23322379 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 72.55% | 27.45% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 493 | 31.03% | 68.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 39.82% | 60.18% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623322379 | C->T | LOC_Os06g39300(LOC_Os06g39300.1) | INTRON |