Detailed information of SNP:
|
SNP ID:
sf0623328459(Gbrowse)
Chromosome: chr06 Position: 23328459 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 73.55% | 26.45% |
| All Indica | 762 | 55.38% | 44.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 347 | 29.68% | 70.32% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 203 | 61.58% | 38.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623328459 | G->A | LOC_Os06g39320(LOC_Os06g39320.1) | Synonymous |