Detailed information of SNP:
|
SNP ID:
sf0623348637(Gbrowse)
Chromosome: chr06 Position: 23348637 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 92.45% | 7.55% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 79.03% | 20.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 71.56% | 28.44% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623348637 | T->C | LOC_Os06g39344(LOC_Os06g39344.1) | INTRON |
| sf0623348637 | T->C | LOC_Os06g39344(LOC_Os06g39344.3) | INTRON |
| sf0623348637 | T->C | LOC_Os06g39344(LOC_Os06g39344.2) | INTRON |