Detailed information of SNP:
|
SNP ID:
sf0623361790(Gbrowse)
Chromosome: chr06 Position: 23361790 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.45% | 39.55% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623361790 | T->C | INTERGENIC | None |