Detailed information of SNP:
|
SNP ID:
sf0623386559(Gbrowse)
Chromosome: chr06 Position: 23386559 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 92.57% | 7.43% |
| All Indica | 793 | 87.01% | 12.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 207 | 82.13% | 17.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623386559 | A->G | LOC_Os06g39400(LOC_Os06g39400.1) | Synonymous |