Detailed information of SNP:
|
SNP ID:
sf0623426587(Gbrowse)
Chromosome: chr06 Position: 23426587 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1350 | 64.74% | 35.26% |
| All Indica | 781 | 88.22% | 11.78% |
| All Japonica | 449 | 20.71% | 79.29% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 367 | 89.10% | 10.90% |
| Indica II | 209 | 86.12% | 13.88% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 303 | 14.52% | 85.48% |
| Tropical Japonica | 84 | 38.10% | 61.90% |
| Japonica Intermediate | 62 | 27.42% | 72.58% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623426587 | G->T | LOC_Os06g39450(LOC_Os06g39450.1) | Non-Synonymous SNP |