Detailed information of SNP:
|
SNP ID:
sf0623459567(Gbrowse)
Chromosome: chr06 Position: 23459567 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 79.49% | 20.51% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 493 | 47.46% | 52.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 52.27% | 47.73% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623459567 | T->C | LOC_Os06g39515(LOC_Os06g39515.1) | INTRON |