Detailed information of SNP:
|
SNP ID:
sf0623460789(Gbrowse)
Chromosome: chr06 Position: 23460789 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.42% | 39.58% |
| All Indica | 795 | 53.08% | 46.92% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 82.62% | 17.38% |
| Indica II | 211 | 23.70% | 76.30% |
| Indica Intermediate | 210 | 30.00% | 70.00% |
| Temperate Japonica | 335 | 67.76% | 32.24% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623460789 | G->A | LOC_Os06g39515(LOC_Os06g39515.1) | INTRON |