Detailed information of SNP:
|
SNP ID:
sf0623496578(Gbrowse)
Chromosome: chr06 Position: 23496578 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.80% | 6.20% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623496578 | G->A | INTERGENIC | None |