Detailed information of SNP:
|
SNP ID:
sf0623501562(Gbrowse)
Chromosome: chr06 Position: 23501562 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.52% | 40.48% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623501562 | G->C | LOC_Os06g39590(LOC_Os06g39590.1) | Non-Synonymous SNP |
| sf0623501562 | G->C | LOC_Os06g39590(LOC_Os06g39590.2) | Non-Synonymous SNP |