Detailed information of SNP:
|
SNP ID:
sf0623598308(Gbrowse)
Chromosome: chr06 Position: 23598308 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 91.93% | 8.07% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 493 | 80.93% | 19.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 81.44% | 18.56% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623598308 | C->A | INTERGENIC | None |