Detailed information of SNP:
|
SNP ID:
sf0623600530(Gbrowse)
Chromosome: chr06 Position: 23600530 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 75.55% | 24.45% |
| All Indica | 799 | 83.73% | 16.27% |
| All Japonica | 497 | 72.23% | 27.77% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623600530 | C->A | INTERGENIC | None |