Detailed information of SNP:
|
SNP ID:
sf0623661683(Gbrowse)
Chromosome: chr06 Position: 23661683 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 80.59% | 19.41% |
| All Indica | 797 | 71.52% | 28.48% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 210 | 55.71% | 44.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623661683 | C->T | LOC_Os06g39830(LOC_Os06g39830.1) | INTRON |