Detailed information of SNP:
|
SNP ID:
sf0623661687(Gbrowse)
Chromosome: chr06 Position: 23661687 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 80.82% | 19.18% |
| All Indica | 798 | 71.80% | 28.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623661687 | A->C | LOC_Os06g39830(LOC_Os06g39830.1) | INTRON |