Detailed information of SNP:
|
SNP ID:
sf0623759479(Gbrowse)
Chromosome: chr06 Position: 23759479 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 94.25% | 5.75% |
| All Indica | 794 | 99.24% | 0.76% |
| All Japonica | 474 | 85.44% | 14.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 92.17% | 7.83% |
| Tropical Japonica | 75 | 50.67% | 49.33% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623759479 | G->T | LOC_Os06g39950(LOC_Os06g39950.1) | Non-Synonymous SNP |