Detailed information of SNP:



SNP ID: sf0623773688(Gbrowse)

Chromosome: chr06

Position: 23773688
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 63.23% 36.77%
All Indica798 97.24% 2.76%
All Japonica497 1.41% 98.59%
Aus67 100.00% 0.00%
Indica I374 99.73% 0.27%
Indica II213 92.49% 7.51%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 78.05% 21.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0623773688 A->G LOC_Os06g39960(LOC_Os06g39960.1) INTRON