Detailed information of SNP:
SNP ID:
sf0623773688(Gbrowse)
Chromosome: chr06 Position: 23773688 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1417 | 63.23% | 36.77% |
All Indica | 798 | 97.24% | 2.76% |
All Japonica | 497 | 1.41% | 98.59% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 99.73% | 0.27% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 1.19% | 98.81% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 4.41% | 95.59% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0623773688 | A->G | LOC_Os06g39960(LOC_Os06g39960.1) | INTRON |