Detailed information of SNP:
|
SNP ID:
sf0623783367(Gbrowse)
Chromosome: chr06 Position: 23783367 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1158 | 70.21% | 29.79% |
| All Indica | 697 | 53.95% | 46.05% |
| All Japonica | 344 | 96.80% | 3.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 312 | 26.60% | 73.40% |
| Indica II | 199 | 84.42% | 15.58% |
| Indica Intermediate | 186 | 67.20% | 32.80% |
| Temperate Japonica | 262 | 97.33% | 2.67% |
| Tropical Japonica | 25 | 88.00% | 12.00% |
| Japonica Intermediate | 57 | 98.25% | 1.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623783367 | T->G | INTERGENIC | None |