Detailed information of SNP:
SNP ID:
sf0623790760(Gbrowse)
Chromosome: chr06 Position: 23790760 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1414 | 98.02% | 1.98% |
All Indica | 798 | 98.62% | 1.38% |
All Japonica | 494 | 96.96% | 3.04% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 96.71% | 3.29% |
Indica Intermediate | 210 | 98.57% | 1.43% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 91 | 83.52% | 16.48% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0623790760 | G->A | LOC_Os06g40000(LOC_Os06g40000.1) | Non-Synonymous SNP |