Detailed information of SNP:
|
SNP ID:
sf0623792376(Gbrowse)
Chromosome: chr06 Position: 23792376 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 89.15% | 10.85% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 490 | 70.61% | 29.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 77.18% | 22.82% |
| Tropical Japonica | 90 | 35.56% | 64.44% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623792376 | C->T | LOC_Os06g40000(LOC_Os06g40000.1) | Non-Synonymous SNP |