Detailed information of SNP:
|
SNP ID:
sf0623832226(Gbrowse)
Chromosome: chr06 Position: 23832226 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1208 | 70.86% | 29.14% |
| All Indica | 646 | 97.06% | 2.94% |
| All Japonica | 449 | 27.17% | 72.83% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 295 | 96.61% | 3.39% |
| Indica II | 176 | 97.73% | 2.27% |
| Indica Intermediate | 175 | 97.14% | 2.86% |
| Temperate Japonica | 308 | 15.26% | 84.74% |
| Tropical Japonica | 78 | 82.05% | 17.95% |
| Japonica Intermediate | 63 | 17.46% | 82.54% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623832226 | A->G | INTERGENIC | None |