Detailed information of SNP:
|
SNP ID:
sf0623954392(Gbrowse)
Chromosome: chr06 Position: 23954392 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 94.14% | 5.86% |
| All Indica | 797 | 95.48% | 4.52% |
| All Japonica | 479 | 92.90% | 7.10% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 319 | 98.75% | 1.25% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623954392 | G->A | INTERGENIC | None |