Detailed information of SNP:
|
SNP ID:
sf0623975112(Gbrowse)
Chromosome: chr06 Position: 23975112 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1273 | 73.21% | 26.79% |
| All Indica | 656 | 49.24% | 50.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 291 | 41.92% | 58.08% |
| Indica II | 184 | 65.22% | 34.78% |
| Indica Intermediate | 181 | 44.75% | 55.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623975112 | G->A | LOC_Os06g40240(LOC_Os06g40240.1) | Non-Synonymous SNP |