Detailed information of SNP:
SNP ID:
sf0623980972(Gbrowse)
Chromosome: chr06 Position: 23980972 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1411 | 98.87% | 1.13% |
All Indica | 792 | 97.98% | 2.02% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 372 | 97.58% | 2.42% |
Indica II | 210 | 98.10% | 1.90% |
Indica Intermediate | 210 | 98.57% | 1.43% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0623980972 | C->T | LOC_Os06g40260(LOC_Os06g40260.1) | Synonymous |