Detailed information of SNP:
|
SNP ID:
sf0623980978(Gbrowse)
Chromosome: chr06 Position: 23980978 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1349 | 92.81% | 7.19% |
| All Indica | 748 | 89.04% | 10.96% |
| All Japonica | 492 | 98.98% | 1.02% |
| Aus | 60 | 86.67% | 13.33% |
| Indica I | 354 | 90.11% | 9.89% |
| Indica II | 199 | 88.94% | 11.06% |
| Indica Intermediate | 195 | 87.18% | 12.82% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623980978 | A->G | LOC_Os06g40260(LOC_Os06g40260.1) | Synonymous |