Detailed information of SNP:
|
SNP ID:
sf0624012856(Gbrowse)
Chromosome: chr06 Position: 24012856 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1265 | 94.62% | 5.38% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 350 | 80.86% | 19.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 239 | 75.73% | 24.27% |
| Tropical Japonica | 73 | 98.63% | 1.37% |
| Japonica Intermediate | 38 | 78.95% | 21.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624012856 | C->A | INTERGENIC | None |