Detailed information of SNP:
|
SNP ID:
sf0624029083(Gbrowse)
Chromosome: chr06 Position: 24029083 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.69% | 35.31% |
| All Indica | 796 | 97.49% | 2.51% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624029083 | C->T | INTERGENIC | None |