Detailed information of SNP:
|
SNP ID:
sf0624048632(Gbrowse)
Chromosome: chr06 Position: 24048632 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 96.53% | 3.47% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 464 | 94.18% | 5.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 329 | 95.14% | 4.86% |
| Tropical Japonica | 68 | 86.76% | 13.24% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624048632 | T->A | INTERGENIC | None |