Detailed information of SNP:
|
SNP ID:
sf0624061703(Gbrowse)
Chromosome: chr06 Position: 24061703 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 797 | 90.97% | 9.03% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624061703 | T->C | LOC_Os06g40410(LOC_Os06g40410.1) | Synonymous |