Detailed information of SNP:
|
SNP ID:
sf0624083605(Gbrowse)
Chromosome: chr06 Position: 24083605 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.71% | 44.29% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624083605 | T->C | LOC_Os06g40430(LOC_Os06g40430.1) | INTRON |