Detailed information of SNP:
|
SNP ID:
sf0624159670(Gbrowse)
Chromosome: chr06 Position: 24159670 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.67% | 42.33% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 493 | 7.71% | 92.29% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 90 | 28.89% | 71.11% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624159670 | A->G | INTERGENIC | None |