Detailed information of SNP:
|
SNP ID:
sf0624162135(Gbrowse)
Chromosome: chr06 Position: 24162135 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 94.10% | 5.90% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 56 | 19.64% | 80.36% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624162135 | G->A | INTERGENIC | None |