Detailed information of SNP:
|
SNP ID:
sf0624388044(Gbrowse)
Chromosome: chr06 Position: 24388044 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.88% | 35.12% |
| All Indica | 798 | 71.80% | 28.20% |
| All Japonica | 497 | 60.97% | 39.03% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624388044 | C->T | INTERGENIC | None |