Detailed information of SNP:
|
SNP ID:
sf0624406689(Gbrowse)
Chromosome: chr06 Position: 24406689 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 82.93% | 17.07% |
| All Indica | 734 | 79.70% | 20.30% |
| All Japonica | 480 | 96.67% | 3.33% |
| Aus | 62 | 11.29% | 88.71% |
| Indica I | 359 | 89.14% | 10.86% |
| Indica II | 190 | 73.16% | 26.84% |
| Indica Intermediate | 185 | 68.11% | 31.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 78 | 80.77% | 19.23% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624406689 | A->T | INTERGENIC | None |