Detailed information of SNP:
|
SNP ID:
sf0624425386(Gbrowse)
Chromosome: chr06 Position: 24425386 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 75.47% | 24.53% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624425386 | G->A | LOC_Os06g40950(LOC_Os06g40950.1) | Non-Synonymous SNP |