Detailed information of SNP:
|
SNP ID:
sf0624436751(Gbrowse)
Chromosome: chr06 Position: 24436751 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 78.39% | 21.61% |
| All Indica | 798 | 75.44% | 24.56% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624436751 | C->T | INTERGENIC | None |