Detailed information of SNP:
|
SNP ID:
sf0624460844(Gbrowse)
Chromosome: chr06 Position: 24460844 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.00% | 11.00% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 497 | 75.05% | 24.95% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624460844 | C->T | LOC_Os06g40970(LOC_Os06g40970.1) | INTRON |