Detailed information of SNP:
|
SNP ID:
sf0624466447(Gbrowse)
Chromosome: chr06 Position: 24466447 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.94% | 14.06% |
| All Indica | 796 | 95.10% | 4.90% |
| All Japonica | 497 | 68.21% | 31.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624466447 | A->G | INTERGENIC | None |