Detailed information of SNP:
|
SNP ID:
sf0624471084(Gbrowse)
Chromosome: chr06 Position: 24471084 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 51.17% | 48.83% |
| All Indica | 790 | 16.58% | 83.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 17.96% | 82.04% |
| Indica II | 207 | 14.49% | 85.51% |
| Indica Intermediate | 210 | 16.19% | 83.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624471084 | G->A | LOC_Os06g40980(LOC_Os06g40980.1) | Non-Synonymous SNP |