Detailed information of SNP:
|
SNP ID:
sf0624488997(Gbrowse)
Chromosome: chr06 Position: 24488997 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.05% | 42.95% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624488997 | G->C | INTERGENIC | None |