Detailed information of SNP:
|
SNP ID:
sf0624489437(Gbrowse)
Chromosome: chr06 Position: 24489437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 95.42% | 4.58% |
| All Indica | 790 | 99.62% | 0.38% |
| All Japonica | 466 | 99.79% | 0.21% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 204 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 64 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624489437 | G->A | INTERGENIC | None |