Detailed information of SNP:
|
SNP ID:
sf0624528102(Gbrowse)
Chromosome: chr06 Position: 24528102 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 85.48% | 14.52% |
| All Indica | 790 | 99.37% | 0.63% |
| All Japonica | 468 | 64.10% | 35.90% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 204 | 98.04% | 1.96% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 67 | 11.94% | 88.06% |
| Japonica Intermediate | 66 | 40.91% | 59.09% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624528102 | A->C | INTERGENIC | None |