Detailed information of SNP:
|
SNP ID:
sf0624608974(Gbrowse)
Chromosome: chr06 Position: 24608974 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1268 | 63.88% | 36.12% |
| All Indica | 653 | 32.47% | 67.53% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 300 | 26.00% | 74.00% |
| Indica II | 179 | 33.52% | 66.48% |
| Indica Intermediate | 174 | 42.53% | 57.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624608974 | C->T | INTERGENIC | None |