Detailed information of SNP:
|
SNP ID:
sf0624611245(Gbrowse)
Chromosome: chr06 Position: 24611245 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 53.30% | 46.70% |
| All Indica | 777 | 90.73% | 9.27% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 364 | 93.13% | 6.87% |
| Indica II | 205 | 88.29% | 11.71% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624611245 | C->T | INTERGENIC | None |