Detailed information of SNP:
|
SNP ID:
sf0624628290(Gbrowse)
Chromosome: chr06 Position: 24628290 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 62.84% | 37.16% |
| All Indica | 792 | 97.47% | 2.53% |
| All Japonica | 466 | 1.29% | 98.71% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 65 | 1.54% | 98.46% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624628290 | A->C | INTERGENIC | None |