Detailed information of SNP:
|
SNP ID:
sf0624652622(Gbrowse)
Chromosome: chr06 Position: 24652622 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1251 | 60.59% | 39.41% |
| All Indica | 640 | 30.47% | 69.53% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 52.31% | 47.69% |
| Indica I | 295 | 32.88% | 67.12% |
| Indica II | 177 | 26.55% | 73.45% |
| Indica Intermediate | 168 | 30.36% | 69.64% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 55.56% | 44.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624652622 | C->T | LOC_Os06g41200(LOC_Os06g41200.1) | Non-Synonymous SNP |