Detailed information of SNP:
|
SNP ID:
sf0624652758(Gbrowse)
Chromosome: chr06 Position: 24652758 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1297 | 75.25% | 24.75% |
| All Indica | 689 | 56.46% | 43.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 56 | 80.36% | 19.64% |
| Indica I | 316 | 62.03% | 37.97% |
| Indica II | 196 | 43.37% | 56.63% |
| Indica Intermediate | 177 | 61.02% | 38.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624652758 | C->T | LOC_Os06g41200(LOC_Os06g41200.1) | Synonymous |